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43 Open 89 Closed
43 Open 89 Closed
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Issues list

Where is the GUE+ dataset come from?
#143 opened May 8, 2025 by Kewei2023
经过处理后的seqlen长度不统一如何处理
#142 opened Mar 30, 2025 by ssdadeq
Getting triton compiler error while running the inference code mentioned in the README.
#140 opened Mar 22, 2025 by sahiljoshi515
Request for pretraining script
#138 opened Feb 6, 2025 by AstroSign
4
Promoter Detection Class Labels in GUE Dataset
#137 opened Jan 30, 2025 by mprincipato
BertForMaskedLM
#136 opened Jan 28, 2025 by RobinLi7
CUDA out of memory error
#134 opened Jan 15, 2025 by prashant-iiitd
RuntimeError with Shared Tensors in DNABERT-2-117M Configuration Using run_mlm.py
#130 opened Dec 22, 2024 by RobinLi7
1
Shapley plot
#126 opened Nov 9, 2024 by AnshulVerma01
finetune results seems not very stable
#125 opened Oct 29, 2024 by maris205
4
finetune error
#123 opened Oct 29, 2024 by maris205
3
readme for GUE datasets?
#120 opened Oct 17, 2024 by maris205
1
Logits and Labels are different shapes
#119 opened Oct 16, 2024 by SamuelTWu
Suggest better error message than 'assert q.is_cuda and k.is_cuda and v.is_cuda'
#112 opened Sep 9, 2024 by richelbilderbeek
2
How to use fine tuned model for prediction?
#111 opened Sep 1, 2024 by AnshulVerma01
1
Where are your Species Classification datasets?
#110 opened Aug 27, 2024 by andreyfsch
Is it possible to publish the detailed requirement file?
#107 opened Aug 11, 2024 by nettanetta
Is there a way to turn off the setting to use flash attention/triton library?
#104 opened Jul 27, 2024 by vivektreddy
3
GUE labels
#93 opened Jun 11, 2024 by nehmea
Unable to Retrieve ' hidden_states ' Despite ' Setting return_dict=True ' and ' output_hidden_states=True '
#85 opened May 7, 2024 by biglittleme
3
splice site predictions
#83 opened Apr 30, 2024 by amitpande74
How do I output the attention from the model?
#80 opened Apr 5, 2024 by jkb-ag
1
Fine-tune for continuous labels
#79 opened Apr 5, 2024 by buwanim
5
hidden_states = model(inputs)[0] # [1, sequence_length, 768]-- Is the second dimension really the sequence length?
#72 opened Mar 6, 2024 by xueleecs
1
When will the pretraining code be available?
#67 opened Feb 3, 2024 by chenwydj
2
ProTip! Exclude everything labeled bug with -label:bug.