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Pull requests: prody/ProDy

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36 Open 1,306 Closed
36 Open 1,306 Closed
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Pull requests list

start supporting extended pdb id
#2134 opened May 29, 2025 by jamesmkrieger Loading…
fix 0 1 parallel handling
#2132 opened May 26, 2025 by jamesmkrieger Loading…
fix fit map cc handling
#2131 opened May 26, 2025 by jamesmkrieger Loading…
write cc array in clustenm app
#2130 opened May 21, 2025 by jamesmkrieger Loading…
Handle chimerax cif (missing fields)
#2128 opened May 8, 2025 by jamesmkrieger Loading…
add wwpdb ftp and http
#2127 opened May 8, 2025 by jamesmkrieger • Draft
1
Fix parseMMCIF and fetchPDB to get CIF files
#2126 opened May 8, 2025 by jamesmkrieger • Draft
1
extend pfam errors and fix parsePfamPDBs
#2125 opened May 1, 2025 by jamesmkrieger Loading…
1
Write pdb long resname
#2123 opened Apr 29, 2025 by jamesmkrieger Loading…
1
add biomt oper range handling and fix unobserved sequence handling
#2121 opened Apr 27, 2025 by jamesmkrieger Loading…
1
try/except fromstring or frombuffer
#2120 opened Apr 27, 2025 by jamesmkrieger Loading…
1
add rtb app
#2118 opened Apr 27, 2025 by jamesmkrieger Loading…
1
Unpin numpy
#2117 opened Apr 27, 2025 by jamesmkrieger Loading…
1
Add MDDB parsing option to parse Bioexcel functions
#2114 opened Apr 23, 2025 by jamesmkrieger Loading…
3
missing fix for selections bondOrders for saveEns
#2104 opened Mar 27, 2025 by jamesmkrieger Loading…
add nonstd nucleics
#2103 opened Mar 26, 2025 by jamesmkrieger Loading…
1
add kwarg strip_icodes to parsePDB parsePQR
#2101 opened Mar 19, 2025 by jamesmkrieger Loading…
add macos runner
#2048 opened Feb 14, 2025 by jamesmkrieger Loading…
20
Replace np matrix
#2041 opened Feb 12, 2025 by jamesmkrieger Loading…
1
package mmtf test files and hpb.so with prody
#2033 opened Feb 3, 2025 by jamesmkrieger Loading…
4
CaviTracer tool for detecting channels, tunnels, pores
#2018 opened Dec 18, 2024 by karolamik13 Loading…
14
permit atomic input to deformAtoms
#1983 opened Oct 31, 2024 by jamesmkrieger Loading…
1
3
check kdtree search radius as Number to include np float
#1969 opened Oct 8, 2024 by jamesmkrieger Loading…
4
more general top for convert xtc
#1954 opened Sep 17, 2024 by jamesmkrieger Loading…
extend watfinder to more water models and ions
#1953 opened Sep 13, 2024 by jamesmkrieger Loading…
1
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